aristoteleo / dynamo-release

Inclusive model of expression dynamics with conventional or metabolic labeling based scRNA-seq / multiomics, vector field reconstruction and differential geometry analyses
https://dynamo-release.readthedocs.io/en/latest/
BSD 3-Clause "New" or "Revised" License
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Failed building wheel for louvain when I tried to install dynamo-release #689

Closed ruifengy closed 2 weeks ago

ruifengy commented 4 months ago

Hi Xiaojie, I have trouble installing dynamo-release. I used pip install command and the installation interrupted because of failed building wheel for louvain. I did the screen shot and attach here. Thanks, Ruifeng

image

Sichao25 commented 4 months ago

Hi, thanks for raising this issue. Could you try installing louvain (either by pip or conda) first before installing Dynamo?

By the way, louvain is not well maintained, so we are considering replacing it with other packages. I will keep you updated on this.

ruifengy commented 4 months ago

I did, still not working. Error is same: failed building wheel for louvain! Thank you for your response—I really appreciate it

Sichao25 commented 4 months ago

Would you mind sharing your system information with us for debugging purposes? We are planning to update the dependency next week, but I will try to find a workaround for you in the meantime.

ruifengy commented 4 months ago

I am using Ubuntu 18.04 LTS. Please let me know if you need more information. Thank you, Ruifeng

On Fri, Jul 12, 2024 at 11:14 AM Sichao25 @.***> wrote:

Would you mind sharing your system information with us for debugging purposes? We are planning to update the dependency next week, but I will try to find a workaround for you in the meantime.

— Reply to this email directly, view it on GitHub https://github.com/aristoteleo/dynamo-release/issues/689#issuecomment-2225804363, or unsubscribe https://github.com/notifications/unsubscribe-auth/ADSJ3WKOUHLTUQYKLXJYSBLZL7XGPAVCNFSM6AAAAABKPP35N6VHI2DSMVQWIX3LMV43OSLTON2WKQ3PNVWWK3TUHMZDEMRVHAYDIMZWGM . You are receiving this because you authored the thread.Message ID: @.***>

-- Ruifeng Yang, PhD Research Associate Department of Dermatology Perelman School of Medicine University of Pennsylvania Philadelphia, PA19104

Sichao25 commented 4 months ago

Hi, just to let you know, we have updated our GitHub repository and removed Louvain. This seems to be the easiest way to resolve this issue for now

ruifengy commented 3 months ago

Awesome, thanks for the update!

On Mon, Jul 22, 2024 at 2:29 PM Sichao25 @.***> wrote:

Hi, just to let you know, we have updated our GitHub repository and removed Louvain. This seems to be the easiest way to resolve this issue for now

— Reply to this email directly, view it on GitHub https://github.com/aristoteleo/dynamo-release/issues/689#issuecomment-2243565345, or unsubscribe https://github.com/notifications/unsubscribe-auth/ADSJ3WMJAYXV7INDTDJBSOLZNVFPBAVCNFSM6AAAAABKPP35N6VHI2DSMVQWIX3LMV43OSLTON2WKQ3PNVWWK3TUHMZDENBTGU3DKMZUGU . You are receiving this because you authored the thread.Message ID: @.***>

-- Ruifeng Yang, PhD Research Associate Department of Dermatology Perelman School of Medicine University of Pennsylvania Philadelphia, PA19104

github-actions[bot] commented 4 weeks ago

This issue is stale because it has been open 90 days with no activity. Remove stale label or comment or this will be closed in 14 days