aristoteleo / dynamo-release

Inclusive model of expression dynamics with conventional or metabolic labeling based scRNA-seq / multiomics, vector field reconstruction and differential geometry analyses
https://dynamo-release.readthedocs.io/en/latest/
BSD 3-Clause "New" or "Revised" License
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can't get dyn.tl.moments to work #699

Open paupaiz opened 3 months ago

paupaiz commented 3 months ago

dyn.tl.moments(adata, group="time")

error:

ValueError Traceback (most recent call last) /home/paulina/dynamo/dynamo.ipynb Cell 32 line 1 ----> 1 dyn.tl.moments(adata, group="time")

File ~/miniconda3/lib/python3.12/site-packages/dynamo/tools/moments.py:167, in moments(adata, X_data, genes, group, conn, use_gaussian_kernel, normalize, use_mnn, layers, n_pca_components, n_neighbors, copy) 164 cur_conn = normalize_knn_graph(cur_kNN > 0) 166 curcells = np.where(cur_cells)[0] --> <a href='~/miniconda3/lib/python3.12/s

Sichao25 commented 3 months ago

Hi, thanks for reporting this bug. Could you please share the full traceback error information?

github-actions[bot] commented 23 hours ago

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