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aristoteleo
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spateo-release
Spatiotemporal modeling of spatial transcriptomics
https://spateo-release.readthedocs.io/
BSD 2-Clause "Simplified" License
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when runnning st.align.morpho_align_ref : NameError: name 'BA_align' is not defined
#271
forrwill
opened
2 days ago
3
bug of align_preprocess
#270
caiquanyou
opened
1 week ago
1
Aligning nuclei staining map and gem coordinates
#269
Claud1ia
opened
1 week ago
1
Debug duplicate signatures in `numba.vectorize()`
#268
Sichao25
opened
1 week ago
0
How to make two mesh VTK data conbine to one VTK data?
#267
uush99
opened
1 week ago
2
Debug PyPI publish workflow
#266
Sichao25
closed
1 week ago
0
PrinCurve_method needs specific tensorflow
#265
Secretloong
opened
2 weeks ago
1
missing dict in morphofield_gp
#264
Secretloong
opened
2 weeks ago
1
TypeError when creating AnnData object from Pandas DataFrame
#263
WeipengMO
opened
3 weeks ago
1
import lastest spateo error
#262
ChangliangWang
opened
1 month ago
2
Optimize function calling in `paste_pairwise_align`
#261
Sichao25
opened
1 month ago
0
Can I use non cellsplited data to use spateo to make 3D?
#260
uush99
opened
1 month ago
1
Merge the latest Spateo alignment in Yifan's branch into the main.
#259
YifanLu2000
closed
1 month ago
0
Sample data missing
#258
Sichao25
opened
1 month ago
0
How to transfer xenium dataset to Anndata which could be used for 3D visualization
#257
Yifan-debug
opened
1 month ago
6
pip下载安装的时候显示错误
#256
Yifan-debug
opened
1 month ago
6
Restore contour.py
#255
Sichao25
closed
2 months ago
0
Remove `trame` and `trame-server` from requirements
#254
Sichao25
opened
2 months ago
1
Upgrade matplotlib
#253
Sichao25
closed
1 week ago
0
AttributeError: module 'spateo.pl' has no attribute 'spatial_domains'
#252
Donbbit
opened
2 months ago
1
Deprecate sparse matrix `.A` attributes
#251
Sichao25
closed
2 months ago
0
Optimized `SCC` Implementation and Removed `TensorFlow` Dependencies
#250
Starlitnightly
opened
2 months ago
9
Optimized SCC performance & fix some bugs
#249
Purkinje-cell
opened
2 months ago
1
Fixed some bugs in CCI code
#248
Purkinje-cell
closed
2 months ago
1
not enough memory to run construct_surface
#247
caiquanyou
opened
2 months ago
2
update matplotlib version
#246
chansigit
closed
3 months ago
0
Fixed concatenate issues when using gaussian distribution
#245
Purkinje-cell
closed
2 months ago
0
Clean up the requirement package
#244
YifanLu2000
opened
3 months ago
2
update matplotlib dependencies
#242
chansigit
closed
3 months ago
0
'TorchBackend' object has no attribute 'sort2'
#241
zEpoch
closed
3 months ago
2
KeyError: 'Index (0) not understood. ...'
#240
Mollyx06
opened
3 months ago
2
matplotlib dependency is really outdated
#238
chansigit
opened
4 months ago
1
Remove mpi4py
#237
Sichao25
closed
4 months ago
0
3D重构slice对齐步骤报错
#236
seqyuan
opened
4 months ago
2
cell segmentation cs.score_and_mask_pixels function modulenotfounderror
#235
vivian-huang
opened
5 months ago
2
Microenvironment modeling analysis (patsy.PatsyError: categorical data cannot be >1-dimensional)
#234
heziqing
opened
6 months ago
2
errors about ot.gromov.cg
#232
chansigit
closed
1 month ago
1
question about how to plot cell segmentaion results
#231
caiquanyou
closed
1 month ago
1
After installing the latest Spateo, following the tutorial cannot reproduce the results
#230
elegantmedstu
closed
1 month ago
2
question abour cell segmeantation
#229
caiquanyou
closed
6 months ago
1
The boundary_line is empty when I used with st.dd.identify_boundary
#228
yang050036
closed
2 weeks ago
2
AttributeError: 'tuple' object has no attribute 'copy' of stage1_aligned_pc = st.tdr.construct_pc()
#227
weiyouzi321
closed
7 months ago
2
AttributeError: module 'spateo.tl' has no attribute 'models_align_ref'
#226
weiyouzi321
closed
7 months ago
2
AttributeError: module 'spateo.tl' has no attribute 'weighted_spatial_graph'
#225
xhli2
opened
7 months ago
9
Merge Daniel's developmental branch
#224
dzhu8
closed
7 months ago
0
Merge Daniel's developmental branch
#223
dzhu8
closed
8 months ago
0
Merge Daniel developmental branch
#222
dzhu8
closed
8 months ago
0
Set `sphinxext-opengraph` to 0.8.2
#221
Sichao25
closed
8 months ago
0
Merge dzhu developmental branch
#220
dzhu8
closed
8 months ago
0
Merge dzhu developmental branch
#219
dzhu8
closed
8 months ago
0
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