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aristoteleo / spateo-tutorials

tutorials for spateo package
MIT License
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Problem about tutorials of cell segmentation #1

Open Zhixuan-Jing opened 1 year ago

Zhixuan-Jing commented 1 year ago

Hi developers, I am trying to run the code of stain segmentation and rna segmentation but failed due to the dataset. The two dataset- SS200000135IL-D1.ssDNA.tif and SS200000135TL_D1_all_bin1.txt.gz cannot be read by API. The process is exactly the same as ipy notebook, but I still cannot load it. The error is shown as follow,

1669023000490

Thanks for the help and looking forward to your reply

wqy399 commented 2 weeks ago

can not download these 2 datasets at all! Nobody replies and nobody cares!

Xiaojieqiu commented 2 weeks ago

@Sichao25 @YifanLu2000 can you guys help with addressing the issue? the users are complaining about the missing of the data. we need to do a better job on fixing such simple issues.

YifanLu2000 commented 2 weeks ago

Hi, I apologize for the issues you encountered while running the Spateo tutorial. I have rerun the code and it appears that the download link is working correctly. QQ_1725668369489

Could you please provide the error message you received during your run? This will help us better assist you in resolving the issue. Btw, could you also try copying the links in the tutorial into your browser to download the file, and then place it in the appropriate location of your notebook? I hope this helps!

Xiaojieqiu commented 2 weeks ago

please make sure you have VPN enabled when downloading data from google drive or dropbox as it may be blocked.