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aristoteleo / spateo-tutorials

tutorials for spateo package
MIT License
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Missing h5ad file in 3D reconstruction #3

Open fym0503 opened 1 year ago

fym0503 commented 1 year ago

In 5_tdr/3D reconstruction.ipynb, The provided file here is missing adata = st.sample_data.drosophila(filename="E7-9h_cellbin.h5ad") Traceback (most recent call last): File "/mnt/data/aim/fanyimin/projects/spateo-tutorials/5_tdr/3D Reconstruction.py", line 33, in adata = st.sample_data.drosophila(filename="E7-9h_cellbin.h5ad") File "/mnt/data/aim/fanyimin/projects/spateo-release/spateo/sample_data.py", line 118, in drosophila adata = get_adata(url=url_dict[filename], filename=filename, dir_name=dir_name) KeyError: 'E7-9h_cellbin.h5ad'

matthieuheitz commented 10 months ago

I would also be interested in having this file. Where can we access the timepoints collected in Spateo's publication? Wang et al. provide E14-16 and E16-18, where can we access E7-9 and E9-10? Thank you!

matthieuheitz commented 10 months ago

Oh I just saw this: https://github.com/aristoteleo/spateo-release/issues/201#issuecomment-1701952965 Let us know when the paper is published then. Thanks.