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arkal / Transgene

This is a repository to host the transgene tool. Transgene takes a snpeffed vcf and a peptide fasta , and returns 3 peptide fastas containing 9-, 10- and 15-mers harboring the called mutations
Apache License 2.0
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Implement OxoG filtering support (resolves #13) #19

Closed arkal closed 7 years ago

arkal commented 7 years ago

resolves #13

  1. Implemented OxoG filtering
  2. Can nowread and filter snvs with multiple threads
  3. Can now handle some cases where the predicted AA differs from the one seen in the gencode translation
  4. Can now handle X's in the IAR
  5. bams are now parsed faster