This is a repository to host the transgene tool. Transgene takes a snpeffed vcf and a peptide fasta , and returns 3 peptide fastas containing 9-, 10- and 15-mers harboring the called mutations
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Fix bugs introduced by indel support (resolves #41, resolves #42) #43
get_exon_start_pos now properly handles transcripts where the start codon is not in the first exon
mutations are now deepcopied into a new dict and correct_for_same_codon adds a new entry to this
dict in the case of multiple SNVs getting merged into one (pseudo-MNPs).
resolves #41 resolves #42
get_exon_start_posnow properly handles transcripts where the start codon is not in the first exon mutations are now deepcopied into a new dict andcorrect_for_same_codonadds a new entry to this dict in the case of multiple SNVs getting merged into one (pseudo-MNPs).