This is a repository to host the transgene tool. Transgene takes a snpeffed vcf and a peptide fasta , and returns 3 peptide fastas containing 9-, 10- and 15-mers harboring the called mutations
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Fix neg strand deletion edge case (resolves #52) #55
Since such an event affects splicing (indeterminately), we discard them.
This event probably removes the splice junction altogether and won't be
seen in the immunopeptidome anyway.
resolves #52
Since such an event affects splicing (indeterminately), we discard them. This event probably removes the splice junction altogether and won't be seen in the immunopeptidome anyway.