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arklumpus / TreeViewer

Cross-platform software to draw phylogenetic trees
GNU Affero General Public License v3.0
188 stars 9 forks source link

Failling to install any module #48

Open Tangbbmc opened 1 week ago

Tangbbmc commented 1 week ago

TreeViewer was installed on Ubuntu 22.04 LTS. The following error happened: connection refused (raw.githubusercontent.com:443) An error occurred while looking up the module repository! Please check the address of the module repository.

arklumpus commented 1 week ago

Hi! This seems quite similar to the second issue in #29 - I suspect that you might be using a VPN or a proxy server to access GitHub, right?

There might be some issue with your system configuration, such that your browser is able to acccess GitHub, while TreeViewer is not. The easiest way to address this would be to:

  1. Manually download the module file from your browser: https://github.com/arklumpus/TreeViewer/raw/main/Modules/modules.tar.gz
  2. Open a command line and run TreeViewer -I=/path/to/modules.tar.gz (take care to use an equal sign = and not a space between -I and the path to the file)

This should allow you to install all modules without needing to connect to GitHub. Let me know if this works or if you have any other issues!

Tangbbmc commented 6 days ago

@arklumpus Thank you very much for your kind help! I have successfully installed the modules using your method! Could you share me the manual of TreeViewer? I found that this software fails to open the tree file in nkw format.

arklumpus commented 6 days ago

You can find the manual in this repository's wiki: https://github.com/arklumpus/TreeViewer/wiki

What do you mean by nkw format? If the tree file is in Newick format, TreeViewer should be able to open it... Do you get an error message? If you can send me the tree file (either here or via e-mail), I can have a look at it.

Tangbbmc commented 5 days ago

@arklumpus The tree is in the Newick format. I have uploaded it. unroot.zip

arklumpus commented 5 days ago

Ah, I see: the tree file has a first line with the number of taxa and trees (20 1); if you remove that line, you will be able to open it in TreeViewer.

Tangbbmc commented 5 days ago

OK, I got it.

---- Replied Message ---- From Giorgio @.> Date 11/13/2024 16:23 To @.> Cc @.>@.> Subject Re: [arklumpus/TreeViewer] Failling to install any module (Issue #48)

Ah, I see: the tree file has a first line with the number of taxa and trees (20 1); if you remove that line, you will be able to open it in TreeViewer. — Reply to this email directly, view it on GitHub, or unsubscribe. You are receiving this because you authored the thread.Message ID: @.***>