armanbilge B3 issues - Githubissues

armanbilge / B3

Bayesian Evolutionary Analysis by Sampling Trees

GNU General Public License v3.0

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Support an XML templating language

#26 armanbilge opened 9 years ago
0
Make main() methods into JUnit tests

#25 armanbilge opened 9 years ago
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Using resume does not continue writing log file

#24 armanbilge closed 9 years ago
1
Deserialization for resume fails because plugins are not reloaded

#23 armanbilge closed 9 years ago
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Consider using JNA to interface with BEAGLE

#22 armanbilge opened 9 years ago
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BeagleTreeLikelihood with multiple instances on multiple threads returns -Inf

#21 armanbilge closed 9 years ago
1
Create SimpleXMLObjectParser Automatically

#20 armanbilge closed 9 years ago
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Potential bug where threads do not terminate

#19 armanbilge closed 9 years ago
1
Improve Performance of State Serialization for Resume

#18 armanbilge opened 9 years ago
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NumberFormatter is evil

#17 genomescale opened 9 years ago
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Aggressive Initialization

#16 armanbilge opened 9 years ago
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Clever initialization of epsilon/L for HamiltonUpdate

#15 armanbilge opened 9 years ago
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Serialization fails due to ConcurrentModificationException

#14 armanbilge closed 9 years ago
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Log files created prematurely

#13 armanbilge closed 9 years ago
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Remove unused Interfaces, Classes, and Methods

#12 armanbilge opened 9 years ago
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Reinforce separation of Likelihood vs. Model interfaces

#11 armanbilge opened 9 years ago
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Replace Citable/Citation interface/class with annotation

#10 armanbilge closed 9 years ago
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Remove references to BEAST from xml package

#9 armanbilge opened 9 years ago
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Merge beast.evomodel and beast.beagle

#8 armanbilge opened 9 years ago
1
Namespaces for XML parsers

#7 armanbilge opened 9 years ago
0
Use Dirichlet prior for frequencies and relative rates

#6 armanbilge opened 9 years ago
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Don't require a tree to call functions on Nodes

#5 armanbilge opened 9 years ago
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Merge Coalescent Populations with Coalescent Population Models

#4 walterxie opened 9 years ago
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Incompatibility to BEAST 1

#3 walterxie opened 9 years ago
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Simplify and merge tree classes

#2 walterxie opened 9 years ago
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Separate calculations and states in the framework

#1 walterxie opened 9 years ago
0