Closed jdavidm closed 7 years ago
Same happened to me:
* installing *source* package 'rjulia' ...
** libs
C:/Rtools/mingw_64/bin/gcc -m64 -I"D:/MRO-33~1.2/include" -DNDEBUG -I"D:\\Julia-0.5.0\\bin"/../../src -I"D:\\Julia-0.5.0\\bin"/../../src/support -I"D:\\Julia-0.5.0\\bin"/../include -I"D:\\Julia-0.5.0\\bin"/../include/julia -D_WIN32_WINNT=0x0600 -I"C:/swarm/workspace/External-R-3.3.2/vendor/extsoft/include" -O2 -Wall -std=gnu99 -mtune=core2 -c Julia_R.c -o Julia_R.o
In file included from Julia_R.c:10:0:
Julia_R.c: In function 'juliaArrayToSEXP':
D:/MRO-33~1.2/include/Rinternals.h:662:20: warning: 'type' may be used uninitialized in this function [-Wmaybe-uninitialized]
#define PROTECT(s) Rf_protect(s)
^
Julia_R.c:22:12: note: 'type' was declared here
SEXPTYPE type;
^
C:/Rtools/mingw_64/bin/gcc -m64 -I"D:/MRO-33~1.2/include" -DNDEBUG -I"D:\\Julia-0.5.0\\bin"/../../src -I"D:\\Julia-0.5.0\\bin"/../../src/support -I"D:\\Julia-0.5.0\\bin"/../include -I"D:\\Julia-0.5.0\\bin"/../include/julia -D_WIN32_WINNT=0x0600 -I"C:/swarm/workspace/External-R-3.3.2/vendor/extsoft/include" -O2 -Wall -std=gnu99 -mtune=core2 -c R_Julia.c -o R_Julia.o
C:/Rtools/mingw_64/bin/gcc -m64 -I"D:/MRO-33~1.2/include" -DNDEBUG -I"D:\\Julia-0.5.0\\bin"/../../src -I"D:\\Julia-0.5.0\\bin"/../../src/support -I"D:\\Julia-0.5.0\\bin"/../include -I"D:\\Julia-0.5.0\\bin"/../include/julia -D_WIN32_WINNT=0x0600 -I"C:/swarm/workspace/External-R-3.3.2/vendor/extsoft/include" -O2 -Wall -std=gnu99 -mtune=core2 -c dataframe.c -o dataframe.o
C:/Rtools/mingw_64/bin/gcc -m64 -I"D:/MRO-33~1.2/include" -DNDEBUG -I"D:\\Julia-0.5.0\\bin"/../../src -I"D:\\Julia-0.5.0\\bin"/../../src/support -I"D:\\Julia-0.5.0\\bin"/../include -I"D:\\Julia-0.5.0\\bin"/../include/julia -D_WIN32_WINNT=0x0600 -I"C:/swarm/workspace/External-R-3.3.2/vendor/extsoft/include" -O2 -Wall -std=gnu99 -mtune=core2 -c embedding.c -o embedding.o
C:/Rtools/mingw_64/bin/gcc -m64 -shared -s -static-libgcc -o rjulia.dll tmp.def Julia_R.o R_Julia.o dataframe.o embedding.o -LD:\Julia-0.5.0\bin -ljulia -LC:/swarm/workspace/External-R-3.3.2/vendor/extsoft/lib/x64 -LC:/swarm/workspace/External-R-3.3.2/vendor/extsoft/lib -LD:/MRO-33~1.2/bin/x64 -lR
Julia_R.o:Julia_R.c:(.text+0x721): undefined reference to `__imp_jl_tls_states'
Julia_R.o:Julia_R.c:(.text+0x916): undefined reference to `__imp_jl_tls_states'
Julia_R.o:Julia_R.c:(.text+0x1092): undefined reference to `__imp_jl_tls_states'
Julia_R.o:Julia_R.c:(.text+0x10a5): undefined reference to `__imp_jl_tls_states'
Julia_R.o:Julia_R.c:(.text+0x1252): undefined reference to `__imp_jl_tls_states'
Julia_R.o:Julia_R.c:(.text+0x1261): more undefined references to `__imp_jl_tls_states' follow
collect2.exe: error: ld returned 1 exit status
no DLL was created
ERROR: compilation failed for package 'rjulia'
* removing 'D:/MRO-3.3.2/library/rjulia'
this is julia 0.5 issue ,need add one line
before include julia.h
In which files of the rjulia package should I include the "define" statement that you mentioned?
embedding.c
This is handled by our Makevars file now, which uses the example from julialang's embedding docs. This fix is in our julia0.5 and julia0.6 branches.
I am trying to install rjulia0.5 on my machine. I am using julia 0.5.0, R 3.3.2, and RStudio 1.0.44. I get the following error.
define PROTECT(s) Rf_protect(s)
Julia_R.c:22:12: note: 'type' was declared here SEXPTYPE type; ^ c:/Rtools/mingw_64/bin/gcc -I"C:/PROGRA~1/R/R-33~1.2/include" -DNDEBUG -I"C:\Users\ACEUser\AppData\Local\Julia-0.5.0\bin"/../../src -I"C:\Users\ACEUser\AppData\Local\Julia-0.5.0\bin"/../../src/support -I"C:\Users\ACEUser\AppData\Local\Julia-0.5.0\bin"/../include -I"C:\Users\ACEUser\AppData\Local\Julia-0.5.0\bin"/../include/julia -D_WIN32_WINNT=0x0600 -I"d:/Compiler/gcc-4.9.3/local330/include" -O2 -Wall -std=gnu99 -mtune=core2 -c R_Julia.c -o R_Julia.o c:/Rtools/mingw_64/bin/gcc -I"C:/PROGRA~1/R/R-33~1.2/include" -DNDEBUG -I"C:\Users\ACEUser\AppData\Local\Julia-0.5.0\bin"/../../src -I"C:\Users\ACEUser\AppData\Local\Julia-0.5.0\bin"/../../src/support -I"C:\Users\ACEUser\AppData\Local\Julia-0.5.0\bin"/../include -I"C:\Users\ACEUser\AppData\Local\Julia-0.5.0\bin"/../include/julia -D_WIN32_WINNT=0x0600 -I"d:/Compiler/gcc-4.9.3/local330/include" -O2 -Wall -std=gnu99 -mtune=core2 -c dataframe.c -o dataframe.o c:/Rtools/mingw_64/bin/gcc -I"C:/PROGRA~1/R/R-33~1.2/include" -DNDEBUG -I"C:\Users\ACEUser\AppData\Local\Julia-0.5.0\bin"/../../src -I"C:\Users\ACEUser\AppData\Local\Julia-0.5.0\bin"/../../src/support -I"C:\Users\ACEUser\AppData\Local\Julia-0.5.0\bin"/../include -I"C:\Users\ACEUser\AppData\Local\Julia-0.5.0\bin"/../include/julia -D_WIN32_WINNT=0x0600 -I"d:/Compiler/gcc-4.9.3/local330/include" -O2 -Wall -std=gnu99 -mtune=core2 -c embedding.c -o embedding.o c:/Rtools/mingw_64/bin/gcc -shared -s -static-libgcc -o rjulia.dll tmp.def Julia_R.o R_Julia.o dataframe.o embedding.o -LC:\Users\ACEUser\AppData\Local\Julia-0.5.0\bin -ljulia -Ld:/Compiler/gcc-4.9.3/local330/lib/x64 -Ld:/Compiler/gcc-4.9.3/local330/lib -LC:/PROGRA~1/R/R-33~1.2/bin/x64 -lR Julia_R.o:Julia_R.c:(.text+0x721): undefined reference to
__imp_jl_tls_states' Julia_R.o:Julia_R.c:(.text+0x916): undefined reference to
imp_jl_tls_states' Julia_R.o:Julia_R.c:(.text+0x1092): undefined reference to__imp_jl_tls_states' Julia_R.o:Julia_R.c:(.text+0x10a5): undefined reference to
imp_jl_tls_states' Julia_R.o:Julia_R.c:(.text+0x1252): undefined reference to__imp_jl_tls_states' Julia_R.o:Julia_R.c:(.text+0x1261): more undefined references to
__imp_jl_tls_states' follow collect2.exe: error: ld returned 1 exit status no DLL was created ERROR: compilation failed for package 'rjulia'