arms-mbon / data_workspace

This repo is the working area for ARMS-MBON event and omics data: data are collected, harvested, combined, reformatted
MIT License
2 stars 1 forks source link

QC on the PlutoF download: station and arms unit names #3

Closed kmexter closed 2 years ago

kmexter commented 2 years ago

Thing to improve wrt the download from PlutoF as is coded currently (July 27)

If you think we need to discuss a better way to manage this QC of the station and arms unit names, probably better to do so before Aug 12. In the end it may be better to use my input to correct these names, rather than hard-coding, but with alerts for when something new is encountered that I have not yet provided input for

The spreadsheet with the corrections to apply to the station and arms names: PlutoF_QC_v2_StationARMSnames.csv

kmexter commented 2 years ago

Station names are now corrected better, however there are differences between my QC CSV file input and what is in PlutoF, and that is not caught by the script. So first I need to update the QC CSV input and second the code needs to catch these differences. I will raise that as a new issue.