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DEP
DEP package
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Fold change in results doesn't align with LFQ intensities
#42
avanthi96
opened
4 days ago
0
filter_missval function
#41
fedeserral
opened
2 months ago
0
plot_heatmap function not working as data_results gives 0 significant proteins
#40
ahsenu00
opened
7 months ago
0
P adiusted bigger than p value?
#39
mavino
opened
7 months ago
1
How to plot heat map for average values per sample?
#38
AkilaWijerathnaYapa
opened
8 months ago
0
Error in .ebayes(fit = fit, proportion = proportion, stdev.coef.lim = stdev.coef.lim, : No finite residual standard deviations
#37
mbihie
opened
10 months ago
0
Cannot download DEP package
#36
ghost
opened
10 months ago
0
Spearman correlation with plot_cor?
#35
lfc13
opened
1 year ago
0
How to extract proteins from PCs in plot_pca in DEP package
#34
QichenFU
closed
1 year ago
0
Different p-value in each independent run?
#33
Neo-xbx-00
opened
1 year ago
4
Bug fix in filter_missval()
#32
simonmfr
opened
2 years ago
0
Error on make_se
#31
RTCarmo
closed
2 years ago
1
plot_heatmap: extract specific cluster group from heatmap
#30
phoebeshayin
opened
2 years ago
1
Wrong results if the data is not sorted alphabetically
#29
AlexWeinreb
opened
2 years ago
0
Cannot install on mac
#28
meg-bit
closed
2 years ago
2
Handling Technical and Biological Replicates
#27
agave82
opened
2 years ago
2
Error in using interactive analysis using the DEP Shiny apps
#26
anuragraj
closed
2 years ago
4
Interaction term
#25
csijcs
opened
3 years ago
0
Difference between get_results ratio and get_df_wide diff columns
#24
kamoors
opened
3 years ago
0
TMT analysis question used the DEP
#23
Golden-proteogenomics
opened
3 years ago
0
test_gsea(): EnrichR website not responding
#22
PhilJur
opened
3 years ago
2
Adjusted P-values lower than raw P values
#21
ScienceBear
closed
4 years ago
6
Fix some typos.
#20
jdblischak
opened
4 years ago
0
Adding an option to output loadings plot/df in plot_pca()
#19
gtluu
opened
4 years ago
0
Adding an option to output loadings plot in plot_pca()
#18
gtluu
opened
4 years ago
0
non-unique values when setting 'row.names
#17
Jokendo-collab
opened
4 years ago
0
duplicate 'row.names' are not allowed
#16
Jokendo-collab
closed
4 years ago
0
filter_proteins based on proportion in one group
#15
kunjiefan
opened
4 years ago
0
fix get_annotation for exactly 7 levels
#14
childsish
closed
2 years ago
1
fix get_annotation for exactly 7 levels
#13
childsish
closed
4 years ago
1
get_annotation fails with there are exactly 7 conditions/replicates
#12
childsish
closed
2 years ago
3
Batch correction?
#11
patrickturko
opened
5 years ago
3
TMT analysis
#10
dparrine
opened
5 years ago
0
plot_heatmap: Placement of legend
#9
adomingues
opened
5 years ago
0
plot_frequency function run-off on plot
#8
shk44
closed
5 years ago
1
Remove 1 sample and all pvalue adj bump to 1.
#7
ericloud
opened
5 years ago
2
Update plot_functions_explore.R
#6
ericloud
closed
5 years ago
0
Error: object 'cols' not found, when we have exactly 7 samples
#5
ericloud
closed
5 years ago
1
Error when making SE
#4
SophieS9
closed
5 years ago
1
Fix issue #2
#3
const-ae
closed
5 years ago
0
test_diff returns p-values in wrong order
#2
const-ae
closed
5 years ago
1
Arguments Missing
#1
ghost
closed
6 years ago
1