arnor-sigurdsson / EIR

A toolkit for training deep learning models on genotype, tabular, sequence, image, array and binary data.
https://eir.readthedocs.io/
GNU Affero General Public License v3.0
26 stars 5 forks source link

Add loading snp subsets #36

Closed arnor-sigurdsson closed 2 years ago

codecov-commenter commented 2 years ago

Codecov Report

Merging #36 (a46be87) into master (e728c4e) will increase coverage by 0.11%. The diff coverage is 98.79%.

@@            Coverage Diff             @@
##           master      #36      +/-   ##
==========================================
+ Coverage   91.46%   91.57%   +0.11%     
==========================================
  Files          49       49              
  Lines        6770     6813      +43     
==========================================
+ Hits         6192     6239      +47     
+ Misses        578      574       -4     
Impacted Files Coverage Δ
eir/setup/input_setup.py 86.95% <96.77%> (+0.79%) :arrow_up:
eir/data_load/data_augmentation.py 93.52% <100.00%> (+0.04%) :arrow_up:
eir/data_load/data_loading_funcs.py 96.49% <100.00%> (+0.06%) :arrow_up:
eir/data_load/datasets.py 97.16% <100.00%> (+0.06%) :arrow_up:
eir/interpretation/interpret_omics.py 79.87% <100.00%> (+0.10%) :arrow_up:
eir/interpretation/interpretation.py 94.03% <100.00%> (+0.05%) :arrow_up:
eir/models/omics/models_locally_connected.py 83.21% <100.00%> (ø)
eir/models/sequence/transformer_models.py 95.59% <100.00%> (ø)
eir/setup/config.py 85.79% <100.00%> (ø)
eir/setup/schemas.py 100.00% <100.00%> (ø)
... and 2 more

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