RGI couldn't detect mutation in nocode region

arpcard / rgi

Resistance Gene Identifier (RGI). Software to predict resistomes from protein or nucleotide data, including metagenomics data, based on homology and SNP models.

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RGI couldn't detect mutation in nocode region #122

Closed feihongloveworld closed 10 months ago

feihongloveworld commented 3 years ago

hi sir: RGI couldn't detect mutation in nocode region; mutation in promoter regin in Mycobacterium tuberculosis fabG1 confer resistance to isoniazid, RGI disbale do it.

raphenya commented 3 years ago

@feihongloveworld Yes, the mutation from this https://card.mcmaster.ca/ontology/43108 are not being predicted yet in RGI. We are working towards this. Cheers.

github-actions[bot] commented 10 months ago

Issue is stale and will be closed in 7 days unless there is new activity