KeyError: 'Antibiotic+Adjuvant'

[neelam19051]

Hi, i am getting this error when i try to run rgi parser ...

sh rgi1.sh /home/bvs/Neelam/annotated/faa_json/P_aeruginosa_1.faa.json Traceback (most recent call last): File "rgi", line 4, in MainBase() File "/home/bvs/Neelam/rgi/app/MainBase.py", line 82, in init getattr(self, args.command)() File "/home/bvs/Neelam/rgi/app/MainBase.py", line 140, in parser self.parser_run(args) File "/home/bvs/Neelam/rgi/app/MainBase.py", line 147, in parser_run app.Parser.api_main(args) File "/home/bvs/Neelam/rgi/app/Parser.py", line 273, in api_main res = make_json(m,j,args.loose,args.type, snps) File "/home/bvs/Neelam/rgi/app/Parser.py", line 189, in make_json ndict['Best_Hit_ARO_classes'][j[orf][hsp]['ARO_category'][key]['category_aro_class_name']].append(j[orf][hsp]['ARO_category'][key]['category_aro_name']) KeyError: 'Antibiotic+Adjuvant' /home/bvs/Neelam/annotated/faa_json/P_aeruginosa_12939.faa.json Traceback (most recent call last): File "rgi", line 4, in MainBase() File "/home/bvs/Neelam/rgi/app/MainBase.py", line 82, in init getattr(self, args.command)() File "/home/bvs/Neelam/rgi/app/MainBase.py", line 140, in parser self.parser_run(args) File "/home/bvs/Neelam/rgi/app/MainBase.py", line 147, in parser_run app.Parser.api_main(args) File "/home/bvs/Neelam/rgi/app/Parser.py", line 273, in api_main res = make_json(m,j,args.loose,args.type, snps) File "/home/bvs/Neelam/rgi/app/Parser.py", line 189, in make_json ndict['Best_Hit_ARO_classes'][j[orf][hsp]['ARO_category'][key]['category_aro_class_name']].append(j[orf][hsp]['ARO_category'][key]['category_aro_name']) KeyError: 'Antibiotic+Adjuvant'

thank you

[raphenya]

@neelam19051 The rgi parser is used to create the JSON for the RGI wheel on the website. Currently, the Antibiotic+Adjuvant categories are not added to the wheel.