Resistance Gene Identifier (RGI). Software to predict resistomes from protein or nucleotide data, including metagenomics data, based on homology and SNP models.
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--local (or default) assumes no parallel jobs #195
The --local in rgi main assumes that there are no parallel rgi main occurring in the same directory. This assumption causes problems with running rgi main in parallel via snakemake (or similar). It would be helpful to allow the user to set the local of the "local" database (as done with most other bfx software that requires >=1 database).
The
--local
inrgi main
assumes that there are no parallelrgi main
occurring in the same directory. This assumption causes problems with runningrgi main
in parallel via snakemake (or similar). It would be helpful to allow the user to set the local of the "local" database (as done with most other bfx software that requires >=1 database).