raphenya
commented
1 year ago @ neelam19051 This is a limitation on the current heatmap. Maybe break up samples and try generating the heatmaps? Cheers.
Closed neelam19051 closed 1 year ago
raphenya
commented
1 year ago @ neelam19051 This is a limitation on the current heatmap. Maybe break up samples and try generating the heatmaps? Cheers.
Hi, i am using rgi model of CARD database to draw a heatmap of presence and absence of gene and it giving following error.
Traceback (most recent call last): File "rgi", line 4, in
MainBase()
File "/home/bvs/Neelam/rgi/app/MainBase.py", line 82, in init
getattr(self, args.command)()
File "/home/bvs/Neelam/rgi/app/MainBase.py", line 336, in heatmap
self.heatmap_run(args)
File "/home/bvs/Neelam/rgi/app/MainBase.py", line 357, in heatmap_run
obj.run()
File "/home/bvs/Neelam/rgi/app/Heatmap.py", line 836, in run
g = sns.heatmap(df, cmap=custom_cmap, cbar=False, norm=norm) #linewidth=0.5
File "/home/bvs/.local/lib/python3.8/site-packages/seaborn/_decorators.py", line 46, in inner_f
return f(**kwargs)
File "/home/bvs/.local/lib/python3.8/site-packages/seaborn/matrix.py", line 553, in heatmap
plotter.plot(ax, cbar_ax, kwargs)
File "/home/bvs/.local/lib/python3.8/site-packages/seaborn/matrix.py", line 336, in plot
_draw_figure(ax.figure)
File "/home/bvs/.local/lib/python3.8/site-packages/seaborn/utils.py", line 95, in _draw_figure
fig.canvas.draw()
File "/home/bvs/.local/lib/python3.8/site-packages/matplotlib/backends/backend_agg.py", line 431, in draw
self.renderer = self.get_renderer(cleared=True)
File "/home/bvs/.local/lib/python3.8/site-packages/matplotlib/backends/backend_agg.py", line 447, in get_renderer
self.renderer = RendererAgg(w, h, self.figure.dpi)
File "/home/bvs/.local/lib/python3.8/site-packages/matplotlib/backends/backend_agg.py", line 93, in init
self._renderer = _RendererAgg(int(width), int(height), dpi)
ValueError: Image size of 124950x11600 pixels is too large. It must be less than 2^16 in each direction.
Thank you