Closed namnh7 closed 1 year ago
heatmap
and other visualisation tools for RGI/CARD data are scheduled to be moved to a new tool (https://github.com/arpcard/rgi-viz) that hasn't been released yet. This is part of a simplification of the RGI codebase that should result in more visualisation capacity and a faster/easier to install RGI.
We only really recommend using RGI's stable releases (i.e., from https://github.com/arpcard/rgi/releases/ instead of using the pre-release development code) but to prevent anyone else having the same issue I've reverted the master branch to the last release and moved pre-release code to a dev
branch.
If you re-install from the repo/conda or the release page https://github.com/arpcard/rgi/releases/ you will be able to use rgi heatmap
as normal.
I tried the command
rgi heatmap -h
but it is an error:rgi: error: argument command: invalid choice: 'heatmap' (choose from 'main', 'tab', 'parser', 'load', 'auto_load', 'clean', 'galaxy', 'database', 'bwt', 'tm', 'card_annotation', 'wildcard_annotation', 'baits_annotation', 'remove_duplicates', 'kmer_build', 'kmer_query')
Is heatmap command removed?