What format should I use for antibiotic resistance analysis?

arpcard / rgi

Resistance Gene Identifier (RGI). Software to predict resistomes from protein or nucleotide data, including metagenomics data, based on homology and SNP models.

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What format should I use for antibiotic resistance analysis? #213

Closed osidito91 closed 1 year ago

osidito91 commented 1 year ago

Hi, I'm new here. Firstly, I would like to thank you for the bioinformatics contribution to the scientific research work.

I have a question, if I have super heavy shotgun metagenomic contigs, the recommendation is to use CONDA, right?

I currently have a linux computer, I plan to install conda on it. Or do you recommend miniconda? Should I also install python on it?

Thank you very much in advance.

Best regards.

raphenya commented 1 year ago

@osidito91 Yes conda is your best bet for managing software. Cheers.