Resistance Gene Identifier (RGI). Software to predict resistomes from protein or nucleotide data, including metagenomics data, based on homology and SNP models.
Additional context
RGI installed using singularity. Maybe the "WARNING: Skipping mount /var/lib/singularity/mnt/session/etc/resolv.conf [files]: /etc/resolv.conf doesn't exist in container" is related to the problem? The conda installation options is not working (stuck at solving environment)
Hello,
I am struggling to create the CARD annotation files. Any idea of what may be the cause of this error?
Apparently, RGI is not properly locating the paths given.
Input
Trying to create the CARD annotation files
Trying to locate an input file
The path for card.json and nucleotide_input.fasta are both right...
Error log![Screenshot 2023-02-02 at 3 27 34 pm](https://user-images.githubusercontent.com/64544051/216231745-68c1c6dc-20a4-4a74-b8da-fb12f1db71ea.png)
RGI version Resistance Gene Identifier - 5.1.1
Desktop:
Additional context RGI installed using singularity. Maybe the "WARNING: Skipping mount /var/lib/singularity/mnt/session/etc/resolv.conf [files]: /etc/resolv.conf doesn't exist in container" is related to the problem? The conda installation options is not working (stuck at solving environment)
Thank you in advance! :)