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arpcard / rgi

Resistance Gene Identifier (RGI). Software to predict resistomes from protein or nucleotide data, including metagenomics data, based on homology and SNP models.
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Accession file not found. BLAST databases require preprocessing using this command line #217

Closed weiguanyue closed 10 months ago

weiguanyue commented 1 year ago

When running code：rgi main -i faa -o CARD -n 5 --debug -t protein -a DIAMOND --clean --local

INFO 2023-02-18 11:36:33,974 : create blast DB. INFO 2023-02-18 11:36:34,526 : create diamond DB. Error: Accession file not found. BLAST databases require preprocessing using this command line: diamond prepdb -d DATABASE_PATH INFO 2023-02-18 11:36:34,825 : run filter ERROR 2023-02-18 11:36:34,825 : missing blast xml file. Please check if input_type: 'protein' correspond with input file: ‘--low_quality' flag for short contigs to predicts partial genes.

However，when I nonuse the option ,-a DIAMOND,there were nothing wrong happened.

github-actions[bot] commented 10 months ago

Issue is stale and will be closed in 7 days unless there is new activity