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arpcard / rgi

Resistance Gene Identifier (RGI). Software to predict resistomes from protein or nucleotide data, including metagenomics data, based on homology and SNP models.
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can not conda install #218

Closed Wanli-HE closed 1 year ago

Wanli-HE commented 1 year ago

hi do you have any idea why it can not conda install rgi

Wanli-HE commented 1 year ago

and are you plan to solve this?

bgizelarMCW commented 1 year ago

Having same issue trying to install rgi==6.0.2 with conda:

Collecting package metadata (current_repodata.json): done Solving environment: failed with initial frozen solve. Retrying with flexible solve. Solving environment: failed with repodata from current_repodata.json, will retry with next repodata source. Collecting package metadata (repodata.json): done Solving environment: failed with initial frozen solve. Retrying with flexible solve. Solving environment: \ Found conflicts! Looking for incompatible packages. This can take several minutes. Press CTRL-C to abort. failed

ResolvePackageNotFound:

rbtoscan commented 1 year ago

Same here.

Running conda install --channel bioconda rgi for over an hour.

JuanmaMedina commented 1 year ago

I have the same issue. It also gets stuck when specifying to install the most updated version.

conda install --channel conda-forge --channel bioconda --channel defaults rgi

Edit: as stated in https://github.com/arpcard/rgi/issues/216, installing RGI with mamba (in base environment) seems to work fine:

mamba create -c iuc -c conda-forge -c bioconda -c defaults --no-channel-priority --name RGI rgi

rbtoscan commented 1 year ago

I was also successful installing using: conda create --name rgi --channel conda-forge --channel bioconda --channel defaults --no-channel-priority rgi=6.0.1

However it took nearly a week to work. I believe mamba is faster (it usually is).

Yuxia88 commented 1 year ago

Having same issue trying to install rgi==6.0.2 with conda: Solving environment: failed CondaValueError: Malformed version string '~': invalid character(s).

Amjadhpc commented 1 year ago

I have used mamba instead of conda to install rgi==6.0.2 https://anaconda.org/conda-forge/mamba

Just replace conda with mamba in the installation script and it should work fine.

raphenya commented 1 year ago

@Amjadhpc Thank you! @Wanli-HE please try the following command to install RGI lastest version:

mamba create --name rgi --channel conda-forge --channel bioconda --channel defaults rgi=6.0.2