[BUG] Warnings and errors during installation using mamba

[Swt623]

Describe the bug There are "Invalid package cache" warnings and "ClobberError"

Input mamba create --name rgi --channel conda-forge --channel bioconda --channel defaults rgi

Error log

WARNING Invalid package cache, file '/home/wse3132/.conda/pkgs/rgi-6.0.2-pyha8f3691_0/site-packages/app/_data/card.json' has incorrect size WARNING Invalid package cache, file '/home/wse3132/.conda/pkgs/rgi-6.0.2-pyha8f3691_0/site-packages/app/_data/loaded_databases.json' has incorrect size

SafetyError: The package for rgi located at /home/wse3132/.conda/pkgs/rgi-6.0.2-pyha8f3691_0 appears to be corrupted. The path 'site-packages/app/_data/card.json' has an incorrect size.   reported size: 33472923 bytes   actual size: 35357447 bytes

SafetyError: The package for rgi located at /home/wse3132/.conda/pkgs/rgi-6.0.2-pyha8f3691_0 appears to be corrupted. The path 'site-packages/app/_data/loaded_databases.json' has an incorrect size.   reported size: 286 bytes   actual size: 410 bytes

ClobberError: This transaction has incompatible packages due to a shared path.   packages: bioconda/linux-64::perl-compress-raw-bzip2-2.087-pl526he1b5a44_0, bioconda/linux-64::perl-extutils-makemaker-7.36-pl526_1, bioconda/linux-64::perl-io-zlib-1.10-pl526_2, bioconda/linux-64::perl-json-4.02-pl526_0   path: 'lib/5.26.2/x86_64-linux-thread-multi/perllocal.pod'

RGI version 6.0.2 Installation on June 30, 2023.

Desktop (please complete the following information): I am installing on university's high-performance computer cluster which I have successfully installed virtual environemnts for other programs before.

Additional context I am using mamba v0.15.3

[raphenya]

@ Swt623 The best thing is to install RGI using virtual and don't use mamba.

[raphenya]

@Swt623 maybe also try newer versions for mamba?

[raphenya]

@Swt623 please re-open the issue if you get the same error with a newer version of Mamba. Cheers.