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arpcard / rgi

Resistance Gene Identifier (RGI). Software to predict resistomes from protein or nucleotide data, including metagenomics data, based on homology and SNP models.
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Error running rgi heatmap #248

Closed ruwaniama closed 8 months ago

ruwaniama commented 9 months ago

Describe the bug When I run the "rgi heatmap" I get "AttributeError: 'DataFrame' object has no attribute 'append'". This happens when I use the "--category" argument.

Input rgi heatmap -i Contigs/Output/ --category drug_class -o hm -clus both

Input file PLO1_output.json PLO2_output.json

Error log AttributeError: 'DataFrame' object has no attribute 'append'

CARD Version 3.2.8

RGI version 6.0.3

Expected behavior A clear and concise description of what you expected to happen.

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Screenshot 2023-10-15 at 11 43 51

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raphenya commented 8 months ago

@ruwaniama Please re-open this issue if you are still experiencing the same error. Cheers.