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arpcard / rgi

Resistance Gene Identifier (RGI). Software to predict resistomes from protein or nucleotide data, including metagenomics data, based on homology and SNP models.
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USING RGI TOOL V 3.6.2 IN Linux (Ubuntu) #260

Closed mainakbioinfo closed 6 months ago

mainakbioinfo commented 7 months ago

I am getting this error message once I give the command : rgi --help in my Linux system _DeprecationWarning: pkg_resources is deprecated as an API. See https://setuptools.pypa.io/en/latest/pkg_resources.html import('pkg_resources').runscript('RGI==6.0.1', 'rgi')** I am a novice in Python and not able to understand what should be done to overcome the error. I have followed the instructions given in the Github page for installing and setting the RGI tool. Urgently need your intervention since I am in the middle of something very important which cannot be completed if I cant run the wgs data in RGI.. Sincerely looking for your positive response..

raphenya commented 6 months ago

@mainakbioinfo see my comment at https://github.com/arpcard/rgi/issues/261#issuecomment-1877437994