Failed tests and error message

arpcard / rgi

Resistance Gene Identifier (RGI). Software to predict resistomes from protein or nucleotide data, including metagenomics data, based on homology and SNP models.

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Failed tests and error message #265

Closed izip27 closed 5 months ago

izip27 commented 6 months ago

Hello,

I have downloaded rgi and the CARD database using conda. After running "pytest -v -rxs" I get a message saying that there are 16 failed tests. Right above that message I get an error message saying that there is no such file or directory. It looks like it is looking for the card.json file in a location where it is not located. Should I be loading the CARD database into that directory where it is searching for the card.json file?

Thank you for the help in advance!

raphenya commented 5 months ago

@izip27 If you would like to run tests, download the tarball of RGI and change into the tests directory to run the tests. See https://github.com/arpcard/rgi/blob/master/test.sh