Can't run rgi main with multiple input fasta files

[rvincenzi]

Hi. I'm trying to run rgi main with several input fasta files at once. But it's no working. I'm new to this tool. Is it possible?

Input rgi main --input_sequence /Users/rvincenzi/Documents/USP/nepalensis_report/nepalensis_dataset/fasta/*.fasta --output_file /Users/rvincenzi/Documents/USP/nepalensis_report/RGIoutput_file --local --clean

Error log usage: rgi main [-h] -i INPUT_SEQUENCE -o OUTPUT_FILE [-t {contig,protein}] [-a {DIAMOND,BLAST}] [-n THREADS] [--include_loose] [--include_nudge] [--local] [--clean] [--keep] [--debug] [--low_quality] [-d {wgs,plasmid,chromosome,NA}] [-v] [-g {PRODIGAL,PYRODIGAL}] [--split_prodigal_jobs] rgi main: error: unrecognized arguments: /Users/rvincenzi/Documents/USP/nepalensis_report/nepalensis_dataset/fasta/GCF_002442895.1_ASM244289v1_genomic.fasta /Users/rvincenzi/Documents/USP/nepalensis_report/nepalensis_dataset/fasta/GCF_002442935.1_ASM244293v1_genomic.fasta /Users/rvincenzi/Documents/USP/nepalensis_report/nepalensis_dataset/fasta/GCF_002902745.1_ASM290274v1_genomic.fasta /Users/rvincenzi/Documents/USP/nepalensis_report/nepalensis_dataset/fasta/GCF_003042875.1_ASM304287v1_genomic.fasta /Users/rvincenzi/Documents/USP/nepalensis_report/nepalensis_dataset/fasta/GCF_003097555.1_ASM309755v1_genomic.fasta /Users/rvincenzi/Documents/USP/nepalensis_report/nepalensis_dataset/fasta/GCF_003579615.1_ASM357961v1_genomic.fasta /Users/rvincenzi/Documents/USP/nepalensis_report/nepalensis_dataset/fasta/GCF_014635045.1_ASM1463504v1_genomic.fasta /Users/rvincenzi/Documents/USP/nepalensis_report/nepalensis_dataset/fasta/GCF_017368615.1_ASM1736861v1_genomic.fasta /Users/rvincenzi/Documents/USP/nepalensis_report/nepalensis_dataset/fasta/GCF_017368635.1_ASM1736863v1_genomic.fasta /Users/rvincenzi/Documents/USP/nepalensis_report/nepalensis_dataset/fasta/GCF_017368655.1_ASM1736865v1_genomic.fasta /Users/rvincenzi/Documents/USP/nepalensis_report/nepalensis_dataset/fasta/GCF_017368675.1_ASM1736867v1_genomic.fasta /Users/rvincenzi/Documents/USP/nepalensis_report/nepalensis_dataset/fasta/GCF_017368695.1_ASM1736869v1_genomic.fasta /Users/rvincenzi/Documents/USP/nepalensis_report/nepalensis_dataset/fasta/GCF_017368705.1_ASM1736870v1_genomic.fasta /Users/rvincenzi/Documents/USP/nepalensis_report/nepalensis_dataset/fasta/GCF_017368735.1_ASM1736873v1_genomic.fasta /Users/rvincenzi/Documents/USP/nepalensis_report/nepalensis_dataset/fasta/GCF_021189635.1_ASM2118963v1_genomic.fasta /Users/rvincenzi/Documents/USP/nepalensis_report/nepalensis_dataset/fasta/GCF_026626865.1_ASM2662686v1_genomic.fasta /Users/rvincenzi/Documents/USP/nepalensis_report/nepalensis_dataset/fasta/GCF_030056405.2_ASM3005640v2_genomic.fasta /Users/rvincenzi/Documents/USP/nepalensis_report/nepalensis_dataset/fasta/GCF_034030455.1_ASM3403045v1_genomic.fasta /Users/rvincenzi/Documents/USP/nepalensis_report/nepalensis_dataset/fasta/GCF_900458695.1_50305_G01_genomic.fasta /Users/rvincenzi/Documents/USP/nepalensis_report/nepalensis_dataset/fasta/GCF_900458785.1_46837_F02_genomic.fasta /Users/rvincenzi/Documents/USP/nepalensis_report/nepalensis_dataset/fasta/GCF_900458865.1_41556_E01_genomic.fasta /Users/rvincenzi/Documents/USP/nepalensis_report/nepalensis_dataset/fasta/GCF_902362425.1_MGYG-HGUT-00025_genomic.fasta /Users/rvincenzi/Documents/USP/nepalensis_report/nepalensis_dataset/fasta/GCF_910574155.1_MGBC000081_genomic.fasta /Users/rvincenzi/Documents/USP/nepalensis_report/nepalensis_dataset/fasta/GCF_910576055.1_MGBC000231_genomic.fasta /Users/rvincenzi/Documents/USP/nepalensis_report/nepalensis_dataset/fasta/GCF_947498185.1_4-81.fasta_genomic.fasta /Users/rvincenzi/Documents/USP/nepalensis_report/nepalensis_dataset/fasta/GCF_948995735.1_MGBC102935_genomic.fasta /Users/rvincenzi/Documents/USP/nepalensis_report/nepalensis_dataset/fasta/GCF_949025715.1_MGBC102939_genomic.fasta /Users/rvincenzi/Documents/USP/nepalensis_report/nepalensis_dataset/fasta/GCF_949841375.1_MGG03237_1680015469_genomic.fasta /Users/rvincenzi/Documents/USP/nepalensis_report/nepalensis_dataset/fasta/am1E_scaffolds.fasta

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