Use three underscores as an alternative separator when parsing Bam files

arpcard / rgi

Resistance Gene Identifier (RGI). Software to predict resistomes from protein or nucleotide data, including metagenomics data, based on homology and SNP models.

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Use three underscores as an alternative separator when parsing Bam files #271

Closed lvreynoso closed 1 month ago

lvreynoso commented 4 months ago

Hello! When using RGI in our workflows, we have run into an issue where RGI would not properly parse BAM file inputs due to the presence of double underscores __ in our files. This PR uses three underscores ___ as a separator instead.

github-actions[bot] commented 1 month ago

PR is stale and will be closed in 7 days unless there is new activity