arq5x / bedtools

A powerful toolset for genome arithmetic.
http://code.google.com/p/bedtools/
GNU General Public License v2.0
140 stars 85 forks source link

bedtools genomecov #106

Open dashainparis opened 9 years ago

dashainparis commented 9 years ago

Hello, I have some difficulties with running this command:

bedtools genomecov -bga -ibam control_removedups.BAM

It just terminates after a while but do not give any results or errors. I believe the issue can be in my data (but it is sorted, have a header and so on), but how can I guess what exactly?

Thank you in advance!

Dasha