arq5x / bedtools

A powerful toolset for genome arithmetic.
http://code.google.com/p/bedtools/
GNU General Public License v2.0
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tools with -sorted input should default to sorted output #107

Closed brentp closed 9 years ago

brentp commented 9 years ago

it's reasonable to assume that when sending sorted input, I'll get sorted output. If I forget -sortout, it causes weird issues downstream and doesn't seem to increase run-time for most use-cases.