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arq5x / bedtools

A powerful toolset for genome arithmetic.
http://code.google.com/p/bedtools/
GNU General Public License v2.0
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support for MAF files #115

Closed duartemolha closed 8 years ago

duartemolha commented 8 years ago

Hi...

is there any plan to support MAF files in the future? https://wiki.nci.nih.gov/display/TCGA/Mutation+Annotation+Format+%28MAF%29+Specification

Many thanks

arq5x commented 8 years ago

No plan for MAF, sorry. I would suggest writing a simple conversion script.

duartemolha commented 8 years ago

yes... I can convert it easily enough to bed format... it is just that you loose a lot of the metadata associated with it. I believe there is a maf2vcf conversion script .. I'll use that for the time being :)

Thanks

Duarte

[image: --] Duarte Molha [image: https://]about.me/duarte https://about.me/duarte?promo=email_sig

On 7 March 2016 at 15:04, Aaron Quinlan notifications@github.com wrote:

No plan for MAF, sorry. I would suggest writing a simple conversion script.

— Reply to this email directly or view it on GitHub https://github.com/arq5x/bedtools/issues/115#issuecomment-193287148.