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arq5x / bedtools

A powerful toolset for genome arithmetic.
http://code.google.com/p/bedtools/
GNU General Public License v2.0
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bedtools sort -faidx option is undocumented #119

Closed tedtoal closed 7 years ago

tedtoal commented 7 years ago

It is desireable to be able to sort a bed file in the same order as the chromosomes appear in a .fai file. bedtools sort seems to do this, if you give it the -faidx option with the .fai file as an argument. This is not documented on the main bedtools web site page for "sort". I can't remember how I found out about it.

arq5x commented 7 years ago

Oops, thanks. It appears that the last build of the documentation failed. Fixing now.