Closed Adrien-Evo closed 4 years ago
I'm experiencing this bug with one of my bed files too. It works if I just flip which file I specify as "-a" and which as "-b", so I think it's some edge case in bedtools rather than a problem with the file.
This should be fixed in the latest release already. https://github.com/arq5x/bedtools2/pull/780
And dup with https://github.com/arq5x/bedtools2/issues/779
Confirmed 2.29.1 doesn't have the issue. https://github.com/arq5x/bedtools2/releases/tag/v2.29.1
Hi. I had segmentation fault error using bedtools jaccard on one file in particular. I narrowed down the region where the error could be found. It's the file
a
. Files are sorted.a
b
bedtools jaccard -a a -b b -f 1e-09
bedtools is v2.29.0