Open bartgrantham opened 5 years ago
I have a feature request: allow the maskfastacommand to take - as the filename for both -fi and -fo to allow piping fasta files through maskfasta. So something like this would be possible
maskfasta
-
-fi
-fo
zcat unmasked.fa.gz | bedtools maskfasta -bed mask.bed -fi - -fo - | gzip -c - > masked.fa.gz
Even better if it did this by default:
zcat unmasked.fa.gz | bedtools maskfasta -bed mask.bed | gzip -c - > masked.fa.gz
Thank you for the consideration!
I have a feature request: allow the
maskfasta
command to take-
as the filename for both-fi
and-fo
to allow piping fasta files through maskfasta. So something like this would be possibleEven better if it did this by default:
Thank you for the consideration!