I'm interested in defining column separator for -c option in bedtools merge. I have a bedj file where the 4th column of input file has characters that are automatically detected as column separators. I want to ignore those and use TAB as a column separator instead. I have given an example file below and the output I get vs output I expect.
I'm interested in defining column separator for -c option in bedtools merge. I have a bedj file where the 4th column of input file has characters that are automatically detected as column separators. I want to ignore those and use TAB as a column separator instead. I have given an example file below and the output I get vs output I expect.
As you can see merge used comma as a delimiter instead of a TAB. A way to define this input delimiter would be extremely useful.