Open jonathan-bravo opened 1 year ago
Hello,
I am working with nanopore data, and after we do a host removal step we convert the resulting bam file to a fastq file for further processing. When using bedtools bamtofastq -i <BAM> -fq <OUT.fastq> I noticed that the reads are exactly doubled.
bedtools bamtofastq -i <BAM> -fq <OUT.fastq>
Cheers, Johnny
Hello,
I am working with nanopore data, and after we do a host removal step we convert the resulting bam file to a fastq file for further processing. When using
bedtools bamtofastq -i <BAM> -fq <OUT.fastq>
I noticed that the reads are exactly doubled.Cheers, Johnny