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arq5x / bedtools

A powerful toolset for genome arithmetic.
http://code.google.com/p/bedtools/
GNU General Public License v2.0
140 stars 85 forks source link

Fix help for all tools using -abam #32

Closed arq5x closed 12 years ago

arq5x commented 12 years ago

It is not clear to users that -abam is a replacement for -a. It should be made more clear.''

https://groups.google.com/forum/?hl=en&fromgroups=#!topic/bedtools-discuss/AeHMIq4rKRQ