add multiple file support for genomecov

arq5x / bedtools

A powerful toolset for genome arithmetic.

http://code.google.com/p/bedtools/

GNU General Public License v2.0

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add multiple file support for genomecov #65

Closed xubeisi closed 11 years ago

xubeisi commented 11 years ago

genomeCoverageBed -ibams listbam -g chromsize genomeCoverageBed -is listbed -g chromsize

options added: -is The input list file is <bed/gff/vcf>. -ibams The input list file each line is filename in BAM format.

xubeisi commented 11 years ago

wrong understanding of a parameter in source code. this one actually output simple accumulate of different depth number from file. should accumulate on each position and then count. working on it.