Thank you for creating bedtools, it's an amazing tool.
bedtools genomecov has the -max option to combine all positions with depth greater than the specified value. It's also useful to do the inverse, -min to combine all positions less than the value.
One very useful outcome is that it's now possible to use bedtools and nothing else to mask low coverage regions as maskfasta only accepts bed inputs.
Thank you for creating bedtools, it's an amazing tool.
bedtools genomecovhas the-maxoption to combine all positions with depth greater than the specified value. It's also useful to do the inverse,-minto combine all positions less than the value.One very useful outcome is that it's now possible to use bedtools and nothing else to mask low coverage regions as
maskfastaonly accepts bed inputs.Thank you,
Ammar