coverageBed killed - Githubissues

arq5x / bedtools2

bedtools - the swiss army knife for genome arithmetic

MIT License

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Open DexinYang1998 opened 3 years ago

DexinYang1998 commented 3 years ago

When I ran this command, coverageBed -counts -a a.bed -b b.sort.bam > c.tsv, the process broke down. The b.sort.bam was around 2.3G.

coverageBed: line 2: 137437 Killed ${0%/*}/bedtools coverage "$@"

arq5x commented 3 years ago

Waas the process killed because of too much memory or too long of a run time on a cluster? I am not able to help without more information.