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arq5x / gemini

a lightweight db framework for exploring genetic variation.
http://gemini.readthedocs.org
MIT License
318 stars 120 forks source link

add ExAC non TCGA to annotations #588

Open brentp opened 8 years ago

brentp commented 8 years ago

ExAC now provides a site VCF that excludes TCGA samples. There is also a non-psych sites VCF. We could probably merge all 3 in the provenance and add, e.g. AC_ntcga=...;AC_npsyc=...; so that we don't add 2 extra huge files to the downloads.

davemcg commented 8 years ago

Yes please! I've been using this in my VEP annotations. I was thinking I could just use Gemini's ExAC, then I wondered "wait, what version are they using?" I suggest the nonTCGA ExAC numbers become the default for Gemini.