gene network stuff - Githubissues

arq5x / gemini

a lightweight db framework for exploring genetic variation.

http://gemini.readthedocs.org

MIT License

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Open brentp opened 8 years ago

brentp commented 8 years ago

for the inheritance tools and/or gemini query, a user could specify:

--genes genes-of-interest.txt --radius 2 --network stringdb.txt

and we could automatically limit to all genes within a distance of 2 to a gene in genes-of-interest.txt in the network defined in stringdb.txt.

jxchong commented 8 years ago

yes please!