Currently, --gt-filter is not available for de_novo, etc. so that users do not clobber the existing inheritance rules. However, there are cases where one might want to further filter on genotype-related fields such as gt-alt-freqs. It might be worth opening up --gt-filter to these tools under strict assumption such as one is not filtering on gt_types.
Currently,
--gt-filteris not available forde_novo, etc. so that users do not clobber the existing inheritance rules. However, there are cases where one might want to further filter on genotype-related fields such asgt-alt-freqs. It might be worth opening up--gt-filterto these tools under strict assumption such as one is not filtering ongt_types.