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arq5x / gemini

a lightweight db framework for exploring genetic variation.
http://gemini.readthedocs.org
MIT License
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--nonsynonymous option disables --min-aaf/--max-aaf in gemini burden #911

Open wm75 opened 5 years ago

wm75 commented 5 years ago

gemini burden ignores its --min-aaf and --max-aaf options when --nonsynonymous is in use.

Unless this is the intended behavior, this seems straightforward to fix by including the aaf comparisons in the query performed by _nonsynonymous_variants (just like it's done for _medium_or_high_impact_variants).