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arq5x / gemini

a lightweight db framework for exploring genetic variation.
http://gemini.readthedocs.org
MIT License
318 stars 120 forks source link

KeyError: '1002296' #932

Closed ghost closed 5 years ago

ghost commented 5 years ago

I am using gemini version gemini 0.30.2, and get the following error:

Traceback (most recent call last): File "/home/merpos/bin/gemini", line 7, in gemini_main.main() File "/home/merpos/gemini/anaconda/lib/python2.7/site-packages/gemini/gemini_main.py", line 1249, in main args.func(parser, args) File "/home/merpos/gemini/anaconda/lib/python2.7/site-packages/gemini/gemini_main.py", line 439, in query_fn gemini_query.query(parser, args) File "/home/merpos/gemini/anaconda/lib/python2.7/site-packages/gemini/gemini_query.py", line 169, in query run_query(args) File "/home/merpos/gemini/anaconda/lib/python2.7/site-packages/gemini/gemini_query.py", line 135, in run_query gene_needed, args.show_families, subjects=subjects) File "/home/merpos/gemini/anaconda/lib/python2.7/site-packages/gemini/GeminiQuery.py", line 653, in run self.result_proxy = res = iter(self._apply_query()) File "/home/merpos/gemini/anaconda/lib/python2.7/site-packages/gemini/GeminiQuery.py", line 902, in _apply_query self._split_select() File "/home/merpos/gemini/anaconda/lib/python2.7/site-packages/gemini/GeminiQuery.py", line 1257, in _split_select new_col = self._correct_genotype_col(token) File "/home/merpos/gemini/anaconda/lib/python2.7/site-packages/gemini/GeminiQuery.py", line 948, in _correct_genotype_col corrected = "%s[%d]" % (column.lower(), self.sample_to_idx[sample]) KeyError: '1002296'

What does the number of the KeyError mean? Can I find an overview of this somewhere?

Thanks!