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arq5x / gemini

a lightweight db framework for exploring genetic variation.
http://gemini.readthedocs.org
MIT License
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nogls-sub-bcolz.t43 test fails #940

Open mmokrejs opened 4 years ago

mmokrejs commented 4 years ago

Hi, I just installed gemini and ran the test suite but it fails with:

    nogls-sub-bcolz.t43...
/usr/local/share/gemini/anaconda/lib/python2.7/site-packages/bcolz/chunked_eval.py:264: UserWarning: numexpr cannot handle this expression: falling back to the 'python' virtual machine.  You can choose another virtual machine by using the `vm` parameter.
  "numexpr cannot handle this expression: falling back "
1,5c1
< chr1  1222841 1222842 C   T   SCNN1D  C/C C/C
< chr1  1222957 1222958 C   T   SCNN1D  C/C C/C
< chr1  1222962 1222963 C   T   SCNN1D  C/C C/C
< chr1  1225596 1225597 G   A   SCNN1D  G/G G/G
< chr1  1225603 1225604 A   G   SCNN1D  A/A A/A
---
> chr1  1219381 1219382 C   G   SCNN1D  C/C C/C
fail

The last commit is bc84fe20927855352a71c632e873e1518306a5f3