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arq5x / gemini

a lightweight db framework for exploring genetic variation.
http://gemini.readthedocs.org
MIT License
316 stars 119 forks source link

effstring.t03 test fails #943

Open mmokrejs opened 4 years ago

mmokrejs commented 4 years ago

Hi, I just installed gemini and ran the test suite but it fails with:

    effstring.t03...\c
0a1
> CCNL2 5_prime_UTR_variant LOW protein_coding  1   0   0
12d12
< CCNL2 5_prime_UTR_variant LOW protein_coding  1   0   0
14a15
> HES4  5_prime_UTR_variant LOW protein_coding  1   0   0
18d18
< HES4  5_prime_UTR_variant LOW protein_coding  1   0   0
25a26
> NOC2L 3_prime_UTR_variant LOW protein_coding  1   0   0
32d32
< NOC2L 3_prime_UTR_variant LOW protein_coding  1   0   0
43a44,45
> SAMD11    3_prime_UTR_variant LOW protein_coding  1   0   0
> SAMD11    3_prime_UTR_variant LOW protein_coding  1   0   0
58,59d59
< SAMD11    3_prime_UTR_variant LOW protein_coding  1   0   0
< SAMD11    3_prime_UTR_variant LOW protein_coding  1   0   0
fail

The last commit is bc84fe2

brentp commented 4 years ago

hi, you can stop reporting these now. A PR to fix them will be gladly accepted.