arq5x / gemini

a lightweight db framework for exploring genetic variation.
http://gemini.readthedocs.org
MIT License
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cadd.t01 test fails #944

Open mmokrejs opened 4 years ago

mmokrejs commented 4 years ago

Hi, I just installed gemini and ran the test suite but it fails with:

    cadd.t01...\c
2,4c2,4
< chr1  30859   30860   G   C   -0.05   1.96
< chr1  69269   69270   A   G   0.39    8.27
< chr1  69510   69511   A   G   0.54    9.76
---
> chr1  30859   30860   G   C   -0.92   0.39
> chr1  69269   69270   A   G   -1.34   0.03
> chr1  69510   69511   A   G   -1.72   0.01
6,7c6,7
< chr1  879675  879676  G   A   0.06    3.61
< chr1  935491  935492  G   T   0.67    10.84
---
> chr1  879675  879676  G   A   0.56    7.02
> chr1  935491  935492  G   T   0.79    8.17
9,10c9,10
< chr3  60830533    60830534    A   T   None    None
< chr3  60830762    60830763    G   T   None    None
---
> chr3  60830533    60830534    A   T   0.18    4.98
> chr3  60830762    60830763    G   T   -1.65   0.01
fail

The last commit is bc84fe2