arq5x / gemini

a lightweight db framework for exploring genetic variation.
http://gemini.readthedocs.org
MIT License
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facing traceback and 'syntax error' while running this code - gemini load --cores 3 -t snpEff -v $NORMVCF $db #955

Open monika7697 opened 2 years ago

monika7697 commented 2 years ago

Traceback (most recent call last): File "/home/monika_mohite/anaconda3/envs/python2/bin/gemini", line 4, in import('pkg_resources').run_script('gemini==0.30.2', 'gemini') File "/home/monika_mohite/anaconda3/envs/python2/lib/python2.7/site-packages/pkg_resources/init.py", line 666, in run_script self.require(requires)[0].run_script(script_name, ns) File "/home/monika_mohite/anaconda3/envs/python2/lib/python2.7/site-packages/pkg_resources/init.py", line 1462, in run_script exec(code, namespace, namespace) File "/home/monika_mohite/anaconda3/envs/python2/lib/python2.7/site-packages/gemini-0.30.2-py2.7.egg/EGG-INFO/scripts/gemini", line 7, in gemini_main.main() File "/home/monika_mohite/anaconda3/envs/python2/lib/python2.7/site-packages/gemini-0.30.2-py2.7.egg/gemini/gemini_main.py", line 1249, in main args.func(parser, args) File "/home/monika_mohite/anaconda3/envs/python2/lib/python2.7/site-packages/gemini-0.30.2-py2.7.egg/gemini/gemini_main.py", line 201, in load_fn from gemini import gemini_load File "/home/monika_mohite/anaconda3/envs/python2/lib/python2.7/site-packages/gemini-0.30.2-py2.7.egg/gemini/gemini_load.py", line 11, in from cluster_helper.cluster import cluster_view File "/home/monika_mohite/anaconda3/envs/python2/lib/python2.7/site-packages/cluster_helper/cluster.py", line 24, in from ipyparallel import Client File "/home/monika_mohite/anaconda3/envs/python2/lib/python2.7/site-packages/ipyparallel/init.py", line 13, in from traitlets.config.configurable import MultipleInstanceError File "/home/monika_mohite/anaconda3/envs/python2/lib/python2.7/site-packages/traitlets/config/init.py", line 6, in from .application import * File "/home/monika_mohite/anaconda3/envs/python2/lib/python2.7/site-packages/traitlets/config/application.py", line 17, in from decorator import decorator File "/home/monika_mohite/anaconda3/envs/python2/lib/python2.7/site-packages/decorator.py", line 162 print('Error in generated code:', file=sys.stderr) ^ SyntaxError: invalid syntax